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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182909650_182915513_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182909650 - 182915513
Intron Length:
5864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CTGTCCTTATAT
Flanking Amino Acid:
VALFLYFRAQMDPSRISKED
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
87.1
0.83
0.8
85.1
34.9
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
62.5
0.47
1.8
77
45.3

Associated Gene:

Gene:
TNFSF11
Ensembl Gene ID:
ENSAPLG00000005413
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005591
182898363 - 182915747
17385