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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182955091_182955344_F

Intron Information:

Intron Rank:
150752
Intron Class:
major
Intron Phase:
Intron Coordinates:
182955091 - 182955344
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATAGTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.9
89.2
28.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88
0.85
0.6
84.7
23
Minor 5ss
36.1
-1.6
3.8
53.5
43.9
Minor BPS
64
0.52
1.3
74.15
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031001
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022080
182953852 - 182956212
2361