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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182957057_182958101_F

Intron Information:

Intron Rank:
139055
Intron Class:
major
Intron Phase:
Intron Coordinates:
182957057 - 182958101
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGTTTTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.6
0.76
0.9
76.7
37.4
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
50.5
0.09
1.8
67.73
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024879
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038285
182956309 - 182958622
2314