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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182957057_182958675_F

Intron Information:

Intron Rank:
139056
Intron Class:
major
Intron Phase:
Intron Coordinates:
182957057 - 182958675
Intron Length:
1619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTATTTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.8
0.74
0.8
81.7
35.4
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
61
0.2
1.3
66.02
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024879
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045417
182956309 - 182958762
2454