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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182995537_183000924_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182995537 - 183000924
Intron Length:
5388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATGC
Flanking Amino Acid:
HDTATGEFVLLSRRLRERDW
Intron Amino Acid Position:
1909

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.7
0.53
0.8
70.5
30.6
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
45.8
-0.3
1.8
53.84
38.1

Associated Gene:

Gene:
AKAP11
Ensembl Gene ID:
ENSAPLG00000016841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021637
182994421 - 183028380
33960