About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183003112_183003856_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183003112 - 183003856
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTGA
5'SS Class:
major
3'SS Sequence:
TTTAAAAATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTATTTTAAAA
Flanking Amino Acid:
EENLSFPTSDSDGTDDKDED
Intron Amino Acid Position:
1839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
67.1
41
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
67.7
0.4
1.1
60
43.9
Minor 5ss
34.5
-1.8
2.9
41.6
44.9
Minor BPS
62.3
0.38
1.4
69.78
36

Associated Gene:

Gene:
AKAP11
Ensembl Gene ID:
ENSAPLG00000016841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021637
182994421 - 183028380
33960