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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183003941_183008386_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183003941 - 183008386
Intron Length:
4446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAG
U12 Branch Point Sequence:
CTTTTTCTAGTT
Flanking Amino Acid:
ESSSFLHLSDSNGNSSSWSS
Intron Amino Acid Position:
1811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.8
38.5
Major BPS
52
0.05
1.6
63.1
44.4
Major PPT
76.5
0.6
0.9
73
31.8
Minor 5ss
44.9
-0.5
2.6
59.7
44.8
Minor BPS
49.3
0.02
1.9
71.49
40.5

Associated Gene:

Gene:
AKAP11
Ensembl Gene ID:
ENSAPLG00000016841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021637
182994421 - 183028380
33960