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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183008543_183010893_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183008543 - 183010893
Intron Length:
2351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTGTCTTAAAT
Flanking Amino Acid:
MTNIGQAVNISSAGREGFHS
Intron Amino Acid Position:
1759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
75.3
0.57
1
74.3
40.5
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
74.2
0.84
1.4
88.72
36.1

Associated Gene:

Gene:
AKAP11
Ensembl Gene ID:
ENSAPLG00000016841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021637
182994421 - 183028380
33960