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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183018697_183022384_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183018697 - 183022384
Intron Length:
3688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGGCTT
5'SS Class:
major
3'SS Sequence:
GTTTATTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTTTCTTTAATA
Flanking Amino Acid:
NREEQDHFIEITFIGFAEEM
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.2
67.2
43.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.3
0.75
0.8
76.8
37.1
Minor 5ss
39.1
-1.2
3.3
56.6
47.6
Minor BPS
82.1
1
1
83.91
29.8

Associated Gene:

Gene:
AKAP11
Ensembl Gene ID:
ENSAPLG00000016841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021637
182994421 - 183028380
33960