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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183075350_183076872_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183075350 - 183076872
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGCTTCTTATTC
Flanking Amino Acid:
LNKANPRFPESLTRNTAMEI
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
0.8
73.1
36.9
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
59.9
0.29
1.6
66.16
40.1

Associated Gene:

Gene:
DGKH
Ensembl Gene ID:
ENSAPLG00000011129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011621
183065973 - 183116991
51019