About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183076979_183078176_R


Intron Information:

Intron Rank:
21

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
183076979 - 183078176

Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACAATAG

5'SS Class:
major

3'SS Sequence:
CCTATTTTTGTAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTCCTAT

U12 Branch Point Sequence:
TTCTTCCTATTT

Flanking Amino Acid:
CSQAAEELITRICEAAKIHG

Intron Amino Acid Position:
889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.5
0.51
1.1
62.1
39.2

Major BPS
68.8
0.47
1.3
66.7
41.7

Major PPT
80.9
0.69
0.8
76.4
32.1

Minor 5ss
35.6
-1.6
3.3
46.7
48.6

Minor BPS
53.3
0.18
1.9
75.75
41.6

Associated Gene:

Gene:
DGKH

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

183065973 - 183116991
51019