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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183079459_183079747_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183079459 - 183079747
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTTC
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTCTGTAAAA
Flanking Amino Acid:
IKLQHHRIAQCRSVKITILG
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
74.9
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
46.3
-0.4
2.5
61.6
43.2
Minor BPS
50.1
-0
2.1
64.9
41.7

Associated Gene:

Gene:
DGKH
Ensembl Gene ID:
ENSAPLG00000011129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011621
183065973 - 183116991
51019