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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183079862_183083032_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183079862 - 183083032
Intron Length:
3171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATTT
Flanking Amino Acid:
NFWGGTKEDDIFGAPSFDDK
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.5
28.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
33
-1.9
2.8
41.3
38.3
Minor BPS
52.2
0.15
1.5
67.55
37.7

Associated Gene:

Gene:
DGKH
Ensembl Gene ID:
ENSAPLG00000011129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011621
183065973 - 183116991
51019