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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183083141_183086134_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183083141 - 183086134
Intron Length:
2994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATCCATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCCATTACA
Flanking Amino Acid:
KNLEQKVQLECDGQYIPLPS
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
0.9
73.9
35.2
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
62.4
0.38
1.9
77.7
38.3

Associated Gene:

Gene:
DGKH
Ensembl Gene ID:
ENSAPLG00000011129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011621
183065973 - 183116991
51019