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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183094433_183094873_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
183094433 - 183094873
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGCATT
5'SS Class:
major
3'SS Sequence:
TTTAAATAAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
VRQIIEQAEKVVDEQNAHSE
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
78
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.5
0.35
1.1
60.7
43.7
Minor 5ss
38.8
-1.3
3.3
57
47.3
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
DGKH
Ensembl Gene ID:
ENSAPLG00000011129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011621
183065973 - 183116991
51019