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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183095151_183096460_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183095151 - 183096460
Intron Length:
1310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTGTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTCTCTTCACCT
Flanking Amino Acid:
ADEADAMAIKCSELNEKLDL
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.5
35.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
70.6
0.46
0.9
68.9
36.5
Minor 5ss
37.3
-1.4
3.2
48.7
41.3
Minor BPS
59.6
0.38
1.9
79.65
42.8

Associated Gene:

Gene:
DGKH
Ensembl Gene ID:
ENSAPLG00000011129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011621
183065973 - 183116991
51019