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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183096561_183097982_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183096561 - 183097982
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TATTATTGCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTCATTT
Flanking Amino Acid:
DQHSVVISSAKILCETVKDF
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
68.6
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
61.5
0.26
1.2
60.3
44.5
Minor 5ss
35.9
-1.6
2.8
40.5
39.9
Minor BPS
53.6
0.19
1.8
76.54
40.4

Associated Gene:

Gene:
DGKH
Ensembl Gene ID:
ENSAPLG00000011129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011621
183065973 - 183116991
51019