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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183100382_183102112_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183100382 - 183102112
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
ATGTTCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATCTGGAAAC
Flanking Amino Acid:
LERASTKMLDRWSIMSYELK
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
80
0.75
1
78.6
31
Major PPT
76.4
0.59
0.9
70.9
35.4
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
45.7
-0.3
2.1
58.78
39.6

Associated Gene:

Gene:
DGKH
Ensembl Gene ID:
ENSAPLG00000011129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011621
183065973 - 183116991
51019