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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183105039_183106757_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
183105039 - 183106757
Intron Length:
1719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTAGT
5'SS Class:
major
3'SS Sequence:
ACTATGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTTTCTAACT
Flanking Amino Acid:
PTALNSIDSDGFWKATCPPS
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.7
41.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.7
0.49
1
64.4
40.8
Minor 5ss
36.5
-1.5
3
48.4
42.4
Minor BPS
66.4
0.59
1.6
83.74
37.5

Associated Gene:

Gene:
DGKH
Ensembl Gene ID:
ENSAPLG00000011129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011621
183065973 - 183116991
51019