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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183106861_183108045_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183106861 - 183108045
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
DWKCLWCKAMVHTACKDLYP
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.6
Major BPS
71.6
0.54
1
72
33.1
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
31.7
-2.1
3.3
37.8
42.2
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
DGKH
Ensembl Gene ID:
ENSAPLG00000011129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011621
183065973 - 183116991
51019