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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183266284_183276657_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
183266284 - 183276657
Intron Length:
10374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAATC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
KNPELVPQNYMTDSLAQSVI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
73
36.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.7
0.67
0.9
82
27.2
Minor 5ss
40.2
-1.1
3.1
58.7
39.6
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060