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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183305657_183305742_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183305657 - 183305742
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTAACTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAACT
Flanking Amino Acid:
VKDMCLIGGKGCGKTVIAKE
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
87.4
26.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.4
0.48
0.9
67.6
39.2
Minor 5ss
41.1
-1
3.2
58.9
39.4
Minor BPS
75.9
0.89
1.5
90.34
32.7

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060