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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183305821_183311879_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
183305821 - 183311879
Intron Length:
6059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GATGAATTGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATGAATT
Flanking Amino Acid:
YSIEPIMLYQDMTARDLLQQ
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
57.9
0.18
1.2
50.5
46.7
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
49.2
0.02
2.1
73.82
43.2

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060