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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183312041_183313231_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183312041 - 183313231
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGATA
5'SS Class:
major
3'SS Sequence:
TATTTTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTATCTTTTATT
Flanking Amino Acid:
INPGTLAVLQRLIHDRELTL
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.3
78.7
37.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.5
0.55
1
71
38.6
Minor 5ss
31.3
-2.1
3.1
40
45.6
Minor BPS
69.5
0.7
1.5
84.38
36.3

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060