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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183313346_183321467_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183313346 - 183321467
Intron Length:
8122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATAAAACT
Flanking Amino Acid:
LQITDEKLQERSIFPIHPSF
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.8
0.74
0.9
76.8
36.7
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
52.7
0.16
2.1
81.76
39.7

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060