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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183325508_183326301_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183325508 - 183326301
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACGTG
5'SS Class:
major
3'SS Sequence:
TTTCTTCATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TATTTCTTCATT
Flanking Amino Acid:
YYAVNKACLSRFLPNLARSA
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.4
44.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.4
0.73
0.8
82.3
28.5
Minor 5ss
37.9
-1.4
3.7
54.5
49.7
Minor BPS
68.1
0.65
1.7
84.43
36.6

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060