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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183328577_183331568_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183328577 - 183331568
Intron Length:
2992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTTTTTATTT
Flanking Amino Acid:
PDVLFYENAQHMLVMEDMLK
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.6
0.78
0.7
78
36.4
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
59.2
0.37
1.5
73.08
38.9

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060