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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183331641_183342815_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183331641 - 183342815
Intron Length:
11175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATATTTATTT
Flanking Amino Acid:
GEHLLLVGNQGVGKNKIVDR
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.2
0.72
0.9
76.8
37.3
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
52.3
0.15
1.8
69.24
42.2

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060