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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183342893_183355041_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183342893 - 183355041
Intron Length:
12149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCAATTAATA
Flanking Amino Acid:
NRPREYLQLHRDTTVQSLTL
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.7
0.62
0.9
74
35
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
60.6
0.33
1.8
75.53
35.1

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060