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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183355118_183355788_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183355118 - 183355788
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCAGTAGT
5'SS Class:
major
3'SS Sequence:
CTTTATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GATTCTTTATCT
Flanking Amino Acid:
GLIIYEDSPLVKAVKFGHIL
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
74.5
41.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
85.7
0.8
0.8
77.2
36.8
Minor 5ss
33
-1.9
2.7
40.2
39.5
Minor BPS
69.3
0.69
1.6
81.99
39.3

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060