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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183355925_183357285_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
183355925 - 183357285
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
ATCTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCATTTTATCT
Flanking Amino Acid:
VLSDGRRIVANRAHVEGREN
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.7
0.69
0.8
73.5
36.4
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
53.1
0.17
1.6
68.51
42.7

Associated Gene:

Gene:
VWA8
Ensembl Gene ID:
ENSAPLG00000010804
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011264
183262239 - 183367298
105060