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Intron Name: Anas_platyrhynchos_platyrhynchos_1_183499429_183500146_R


Intron Information:

Intron Rank:
15

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
183499429 - 183500146

Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTTAGCATG

5'SS Class:
major

3'SS Sequence:
GTTTTTTTAACAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTAAC

U12 Branch Point Sequence:
GTTTTTTTAACA

Flanking Amino Acid:
EELVPEKLERVENPLEEAIK

Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
68.8
0.44
1.2
64.8
46.6

Major BPS
89.7
0.98
0.7
89.9
20

Major PPT
84.3
0.77
0.9
81
35.4

Minor 5ss
38.9
-1.2
2.8
42.5
44.1

Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
NAA16

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

183494396 - 183540617
46222

183494396 - 183548744
54349