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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183504253_183504630_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183504253 - 183504630
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTCCCTAATA
Flanking Amino Acid:
LFYLKAKIYKHVGNLKEAAK
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.9
0.54
0.8
70.3
29.2
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
70.8
0.65
1.6
79.96
36.4

Associated Gene:

Gene:
NAA16
Ensembl Gene ID:
ENSAPLG00000009514
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009945
183494396 - 183548744
54349
ENSAPLT00000045248
183494396 - 183540617
46222
ENSAPLT00000011218
183502808 - 183548744
45937