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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183529483_183530614_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
183529483 - 183530614
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ACATTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTCATTACAT
Flanking Amino Acid:
CDKLIVEEIKGEMLLKLGRL
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.7
0.51
0.9
69.9
40.7
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
56.3
0.28
2
78.39
43.5

Associated Gene:

Gene:
NAA16
Ensembl Gene ID:
ENSAPLG00000009514
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045248
183494396 - 183540617
46222
ENSAPLT00000011218
183502808 - 183548744
45937
ENSAPLT00000009945
183494396 - 183548744
54349