Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183536946_183538368_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

183536946 - 183538368

Intron Length:

1423

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTACTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAT

Flanking Amino Acid:

IQMRDLEGYRETRYQLLQLR

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

84.6

33.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

70.4

0.46

68.5

36.4

Minor 5ss

42.9

-0.8

2.9

41.2

Minor BPS

79.5

1.2

92.62

Associated Gene:

Gene:

NAA16

Ensembl Gene ID:

ENSAPLG00000009514

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045248

183494396 - 183540617

46222

ENSAPLT00000011218

183502808 - 183548744

45937

ENSAPLT00000009945

183494396 - 183548744

54349