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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183538527_183542513_R

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
183538527 - 183542513
Intron Length:
3987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TAACTTGTATTAG|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TCTTCCTTAACT
Flanking Amino Acid:
GLRNDVKSHVCWHVYGLLQR
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
64.1
0.32
1
63.3
42.4
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
93.8
1.46
0.7
100
28.8

Associated Gene:

Gene:
NAA16
Ensembl Gene ID:
ENSAPLG00000009514
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009945
183494396 - 183548744
54349
ENSAPLT00000011218
183502808 - 183548744
45937