Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183542619_183544759_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

183542619 - 183544759

Intron Length:

2141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACTGTG

5'SS Class:

strong_major

3'SS Sequence:

ATATTTCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATGAT

U12 Branch Point Sequence:

TATTTCTTACAG

Flanking Amino Acid:

LSNPKFAEHGETLAMKGLTL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

1.1

76.2

39.9

Major BPS

75.8

0.64

65.8

Major PPT

83.3

0.75

0.8

77.2

36.3

Minor 5ss

41.8

-0.9

3.2

57.8

46.8

Minor BPS

58.1

0.12

1.8

65.42

42.2

Associated Gene:

Gene:

NAA16

Ensembl Gene ID:

ENSAPLG00000009514

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011218

183502808 - 183548744

45937

ENSAPLT00000009945

183494396 - 183548744

54349