Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183544845_183548735_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

183544845 - 183548735

Intron Length:

3891

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGCTTAAC

5'SS Class:

weak_major

3'SS Sequence:

TTTTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTGAA

U12 Branch Point Sequence:

ATTTTGGTAATT

Flanking Amino Acid:

MVAKCYEQKQYKN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.9

0.04

1.1

54.7

38.1

Major BPS

70.6

0.51

0.9

61.4

36.2

Major PPT

96.8

1.05

0.5

96.1

13.2

Minor 5ss

32.5

-2

45.9

42.5

Minor BPS

48.6

-0

2.5

77.24

40.1

Associated Gene:

Gene:

NAA16

Ensembl Gene ID:

ENSAPLG00000009514

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011218

183502808 - 183548744

45937

ENSAPLT00000009945

183494396 - 183548744

54349