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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183571148_183573475_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183571148 - 183573475
Intron Length:
2328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGCAGATTAACT
Flanking Amino Acid:
IKNEEEEEESGEKVDLELPS
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.3
32.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82
0.72
0.7
73.4
31.6
Minor 5ss
34.4
-1.8
2.8
37.5
40.1
Minor BPS
49.7
0.06
2.1
70.79
45.5

Associated Gene:

Gene:
WBP4
Ensembl Gene ID:
ENSAPLG00000009035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009423
183570334 - 183588035
17702