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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183573661_183574508_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183573661 - 183574508
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
TTTTGCTTAAGG
Flanking Amino Acid:
EAQSPGKKSKRKGDDESEEE
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
86.8
0.83
0.6
85.9
21
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
63.9
0.3
2.1
75
43.3

Associated Gene:

Gene:
WBP4
Ensembl Gene ID:
ENSAPLG00000009035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009423
183570334 - 183588035
17702