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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183574676_183576610_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
183574676 - 183576610
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
ATATCTTGGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AATTATTCAAAT
Flanking Amino Acid:
HTYYYNTQTGVSTWEKPDGF
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
64.8
0.33
1.1
61.3
43.9
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
50.4
0.09
1.8
70.68
39.5

Associated Gene:

Gene:
WBP4
Ensembl Gene ID:
ENSAPLG00000009035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009423
183570334 - 183588035
17702