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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183582301_183583765_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183582301 - 183583765
Intron Length:
1465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTACGATCA
5'SS Class:
major
3'SS Sequence:
TTATTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
CKCWIADNRPSIEFHERGKN
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.2
55.8
38
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
40.1
-1.1
3.3
57.9
46.2
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
WBP4
Ensembl Gene ID:
ENSAPLG00000009035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009423
183570334 - 183588035
17702