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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183583839_183588033_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183583839 - 183588033
Intron Length:
4195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTTCAGATTG
Flanking Amino Acid:
MADYWKSQPK
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
77
31.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
80
0.68
0.7
72.7
32.1
Minor 5ss
32.3
-2
3.3
46.1
42.2
Minor BPS
46.8
-0.3
2
60.75
41.4

Associated Gene:

Gene:
WBP4
Ensembl Gene ID:
ENSAPLG00000009035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009423
183570334 - 183588035
17702