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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183648835_183651498_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
183648835 - 183651498
Intron Length:
2664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTGCAATA
Flanking Amino Acid:
SLKKKNKDGKGNTIYLWEFL
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.3
0.68
0.8
78.5
34
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
48.8
-0
2.1
68.76
38.1

Associated Gene:

Gene:
ELF1
Ensembl Gene ID:
ENSAPLG00000008134
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008469
183629239 - 183660978
31740