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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183663703_183663800_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183663703 - 183663800
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
GTTTCCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GCCCTCTCACGC
Flanking Amino Acid:
PPAPQPPVAPRFSDGDIDRD
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.6
38.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
73.8
0.54
1
69.9
36.5
Minor 5ss
32.6
-2
3.3
43.1
44.2
Minor BPS
38.8
-0.8
1.9
39.67
39.8

Associated Gene:

Gene:
SUGT1
Ensembl Gene ID:
ENSAPLG00000007765
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008067
183663177 - 183689665
26489