About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183663847_183666370_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183663847 - 183666370
Intron Length:
2524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGGC
5'SS Class:
major
3'SS Sequence:
TGTGTCGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTGTCGTTACA
Flanking Amino Acid:
IDRDPAAAARELTRALEKNP
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
60.3
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.1
0.59
1
68.6
42.1
Minor 5ss
24.9
-2.9
3.1
24.4
37.1
Minor BPS
46
-0.3
2.3
63.17
43.1

Associated Gene:

Gene:
SUGT1
Ensembl Gene ID:
ENSAPLG00000007765
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008067
183663177 - 183689665
26489