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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183667169_183667548_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183667169 - 183667548
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGTGTATC
5'SS Class:
major
3'SS Sequence:
TTCTTTGTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AAGTAATTACTG
Flanking Amino Acid:
PSNAVALLRKGLGEYHIKNY
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74
36.6
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.2
0.66
1
80.2
37.3
Minor 5ss
40.5
-1.1
2.7
45.5
42.9
Minor BPS
42.9
-0.6
2
45.15
41

Associated Gene:

Gene:
SUGT1
Ensembl Gene ID:
ENSAPLG00000007765
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008067
183663177 - 183689665
26489