About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183676730_183687892_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183676730 - 183687892
Intron Length:
11163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TCTGGATTAATT
Flanking Amino Acid:
QSTFKVLSTKVEIKMKKPEA
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
81.5
0.71
0.8
77.2
37.1
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
50
0.08
2.1
72.41
45

Associated Gene:

Gene:
SUGT1
Ensembl Gene ID:
ENSAPLG00000007765
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008067
183663177 - 183689665
26489