About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183687984_183688813_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
183687984 - 183688813
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTAT
5'SS Class:
major
3'SS Sequence:
TCTCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TCTTAGCTAACT
Flanking Amino Acid:
DSPKLKQFTPDTQHLYPSSS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
77.8
32.5
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
86.6
0.82
0.7
84.2
23.7
Minor 5ss
44.3
-0.6
2.5
58.6
46
Minor BPS
48.7
-0
2.5
77.62
44.4

Associated Gene:

Gene:
SUGT1
Ensembl Gene ID:
ENSAPLG00000007765
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008067
183663177 - 183689665
26489