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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183696338_183697996_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183696338 - 183697996
Intron Length:
1659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAACATTTAACA
Flanking Amino Acid:
QTLNPDNPYNQLEGEGMAFD
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.8
0.65
0.9
74.9
38.5
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
61.7
0.36
1.5
68.39
37

Associated Gene:

Gene:
CNMD
Ensembl Gene ID:
ENSAPLG00000024638
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037436
183695948 - 183704664
8717